Page Not Found
Page not found. Your pixels are in another canvas.
Sitemap
A list of all the posts and pages found on the site. For you robots out there is an XML version available for digesting as well.
Pages
About me
About me
Page not in menu
This is a page not in th emain menu
Posts
ASHG 2022
Published:
Thoughts from day 1 of ASHG 2022.
Blog Post number 4
Published:
This is a sample blog post. Lorem ipsum I can’t remember the rest of lorem ipsum and don’t have an internet connection right now. Testing testing testing this blog post. Blog posts are cool.
Blog Post number 3
Published:
This is a sample blog post. Lorem ipsum I can’t remember the rest of lorem ipsum and don’t have an internet connection right now. Testing testing testing this blog post. Blog posts are cool.
Blog Post number 2
Published:
This is a sample blog post. Lorem ipsum I can’t remember the rest of lorem ipsum and don’t have an internet connection right now. Testing testing testing this blog post. Blog posts are cool.
Blog Post number 1
Published:
This is a sample blog post. Lorem ipsum I can’t remember the rest of lorem ipsum and don’t have an internet connection right now. Testing testing testing this blog post. Blog posts are cool.
portfolio
COVID-19 County-Level Vaccination Tracker
A Dash web app to illustrate low overhead web design in Python. Vaccination rates provided by CDC have county FIPS codes usable in a Plotly chloropeth plot. 
GEO Illumina 450k data browser
Dash web app part of larger project to automate trend deviation analysis by pull dating from the Gene Expression Omnibus directly. Utilizes GEOparse to pull and parse experiment GSE SOFT files, find columns of interest to combine into a working dataframe. This can then be missing-value imputed and normalized for a variety of downstream analyses, example PCA is shown and colorable by ALE annotations. 
publications
ALE: automated label extraction from GEO metadata
Published in BMC Bioinformatics, 2017
Extracted and prepared gold standard for testing predicted annotations, helped develop label extraction tools.
Recommended citation: Cory B Giles, Chase A Brown, Michael Ripperger, Zane Dennis, Xiavan Roopnarinesingh, Hunter Porter, Aleksandra Perz, Jonathan D Wren. "ALE: automated label extraction from GEO metadata." BMC bioinformatics. 1(2). https://scholar.google.com/citations?view_op=view_citation&hl=en&user=LfwTrvMAAAAJ&authuser=1&citation_for_view=LfwTrvMAAAAJ:u-x6o8ySG0sC
MNEMONIC: MetageNomic Experiment Mining to create an OTU Network of Inhabitant Correlations
Published in BMC Bioinformatics, 2019
Helped identify biologically relevant associations between microbe genomes and health conditions.
Recommended citation: AI Perz, CB Giles, CA Brown, H Porter, X Roopnarinesingh, JD Wren. (2019). "MNEMONIC: MetageNomic Experiment Mining to create an OTU Network of Inhabitant Correlations" BMC Bioinformatics. 1(1).
Placeholder: Trend deviation analysis on SLE
Published in TBD, 2021
Manuscript in progress.
Recommended citation: Xiavan Roopnarinesingh, Patrick Coit, Jonathan D. Wren ,Amr Sawalha. (2021) SLE trend deviation analysis
Multi-tissue DNA methylation microarray signature is predictive of gene function
Published in Epigenetics, 2021
Manuscript submitted.
Recommended citation: Xiavan Roopnarinesingh, Hunter Porter, Cory Giles, Chase Brown, Constantin Georgescu, Jonathan D. Wren . (2021) "Multi-tissue DNA methylation microarray signature is predictive of gene function." Epigenetics. 1(3).
talks
teaching
Teaching experience 1
Undergraduate course, University 1, Department, 2014
This is a description of a teaching experience. You can use markdown like any other post.
Teaching experience 2
Workshop, University 1, Department, 2015
This is a description of a teaching experience. You can use markdown like any other post.